DBNascent | Samples

SRZ5195540 Sample ID 25

**Data sources**
Paper identifier	Agarwal2021kdm1a
SRP accession	SRP097628
GEO accession	GSE93951
Samples	SRR5195540
	SRR5195541

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	181 Mb
Stranded gene read counts	TXT file	931 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	5 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual
Strain	129P2/OlaHsd
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	77,476,522
Duplication proportion	0.50454
Proportion reads mapped	0.7673
Exon/intron ratio	3.16276
Unique read proportion	0.59106

**Bidirectionals**
Total # Tfit bidirectionals	54065
# Promoter Tfit bidirectionals	17539
# Intronic Tfit bidirectionals	14574
# Intergenic Tfit bidirectionals	17979
Total # dREG bidirectionals	47364
# Promoter dREG bidirectionals	8780
# Intronic dREG bidirectionals	15984
# Intergenic dREG bidirectionals	18042
Part of Tfit master merge?	True
Part of dREG master merge?	True