DBNascent | Samples

SRZ5195542 Sample ID 26

**Data sources**
Paper identifier	Agarwal2021kdm1a
SRP accession	SRP097628
GEO accession	GSE93951
Samples	SRR5195542
	SRR5195543

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	197 Mb
Stranded gene read counts	TXT file	932 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	5 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual
Strain	129P2/OlaHsd
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	84,654,730
Duplication proportion	0.50981
Proportion reads mapped	0.7682
Exon/intron ratio	3.16732
Unique read proportion	0.59282

**Bidirectionals**
Total # Tfit bidirectionals	55231
# Promoter Tfit bidirectionals	17493
# Intronic Tfit bidirectionals	14841
# Intergenic Tfit bidirectionals	18768
Total # dREG bidirectionals	49551
# Promoter dREG bidirectionals	8817
# Intronic dREG bidirectionals	16903
# Intergenic dREG bidirectionals	19129
Part of Tfit master merge?	True
Part of dREG master merge?	True