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SRZ5195544 Sample ID 27
| Paper identifier | Agarwal2021kdm1a |
| SRP accession | SRP097628 |
| GEO accession | GSE93951 |
| Samples | SRR5195544 |
| SRR5195545 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 256 Mb |
| Stranded gene read counts | TXT file | 935 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 6 Mb |
| dREG bidirectional regions | BED file | 3 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | |
| Strain | 129P2/OlaHsd |
| Genotype | Kdm1a +/gene trap |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 110,334,248 |
| Duplication proportion | 0.50894 |
| Proportion reads mapped | 0.7437 |
| Exon/intron ratio | 2.9256 |
| Unique read proportion | 0.60334 |
| Total # Tfit bidirectionals | 76165 |
| # Promoter Tfit bidirectionals | 17208 |
| # Intronic Tfit bidirectionals | 20302 |
| # Intergenic Tfit bidirectionals | 33925 |
| Total # dREG bidirectionals | 72196 |
| # Promoter dREG bidirectionals | 9229 |
| # Intronic dREG bidirectionals | 24064 |
| # Intergenic dREG bidirectionals | 33697 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |