DBNascent | Samples

SRZ5195544 Sample ID 27

**Data sources**
Paper identifier	Agarwal2021kdm1a
SRP accession	SRP097628
GEO accession	GSE93951
Samples	SRR5195544
	SRR5195545

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	256 Mb
Stranded gene read counts	TXT file	935 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	6 Mb
dREG bidirectional regions	BED file	3 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual
Strain	129P2/OlaHsd
Genotype	Kdm1a +/gene trap
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	110,334,248
Duplication proportion	0.50894
Proportion reads mapped	0.7437
Exon/intron ratio	2.9256
Unique read proportion	0.60334

**Bidirectionals**
Total # Tfit bidirectionals	76165
# Promoter Tfit bidirectionals	17208
# Intronic Tfit bidirectionals	20302
# Intergenic Tfit bidirectionals	33925
Total # dREG bidirectionals	72196
# Promoter dREG bidirectionals	9229
# Intronic dREG bidirectionals	24064
# Intergenic dREG bidirectionals	33697
Part of Tfit master merge?	True
Part of dREG master merge?	True