DBNascent | Samples

SRZ5251072 Sample ID 351

**Data sources**
Paper identifier	Bouvyliivrand2017analysis
SRP accession	SRP095085
GEO accession	GSE92375
Samples	SRR5251072
	SRR5251073

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	42 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	412 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	HUVEC
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	51
Read depth after trimming	21,323,756
Duplication proportion	0.78504
Proportion reads mapped	0.9168
Exon/intron ratio	2.79775
Unique read proportion	0.32282

**Bidirectionals**
Total # Tfit bidirectionals	12467
# Promoter Tfit bidirectionals	4727
# Intronic Tfit bidirectionals	5276
# Intergenic Tfit bidirectionals	2049
Total # dREG bidirectionals	9599
# Promoter dREG bidirectionals	5529
# Intronic dREG bidirectionals	3038
# Intergenic dREG bidirectionals	1423
Part of Tfit master merge?	True
Part of dREG master merge?	True