DBNascent | Samples

SRZ5251074 Sample ID 352

**Data sources**
Paper identifier	Bouvyliivrand2017analysis
SRP accession	SRP095085
GEO accession	GSE92375
Samples	SRR5251074
	SRR5251075

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	48 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	483 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	HUVEC
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	VEGF-A	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Concentration not included, but likely 50 ng/mL VEGFA due to parallel to GSM1412750
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	51
Read depth after trimming	29,414,758
Duplication proportion	0.79989
Proportion reads mapped	0.8561
Exon/intron ratio	2.57619
Unique read proportion	0.35523

**Bidirectionals**
Total # Tfit bidirectionals	14106
# Promoter Tfit bidirectionals	5201
# Intronic Tfit bidirectionals	6278
# Intergenic Tfit bidirectionals	2324
Total # dREG bidirectionals	11258
# Promoter dREG bidirectionals	6121
# Intronic dREG bidirectionals	3828
# Intergenic dREG bidirectionals	1665
Part of Tfit master merge?	True
Part of dREG master merge?	True