SRZ5298783 Sample ID 1019

Data sources
Paper identifier Incarnato2017vivo
SRP accession SRP100931
GEO accession GSE95567
Samples SRR5298783
SRR5298784
SRR5298785
SRR5298786
Technical details
QC score 4
Replicate 1
Protocol other
Library prep ligation
Spike-in None
Single/Paired end paired
Raw strandedness read1 forward
Reverse complemented? True
Mapped strandedness read1 forward
Timecourse False
Control/Experimental control
Wildtype & Untreated? True
Outlier No
Unusable Yes
Downloads
TDF visualization file TDF file 27 Mb
Cellular details
Organism E. coli
Sample type organism
Cell type whole bacteria
Clone/Individual
Strain K-12
Genotype
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
no treatment None None None
Extended notes
Pipeline info and software versions
Sample notes SPET-seq (Ribo- RNA); This is structural data from in vitro nascent transcription - not useful for comparison purposes
Analysis notes Preseq failed for SRZ
Sample metrics
Sample QC score 4
Sample NRO score 1
Raw read length 76
Read depth after trimming 209,748,656
Duplication proportion 0.78949
Proportion reads mapped 0.8894
Exon/intron ratio 2.50044
Unique read proportion 0.12608
Bidirectionals
Total # Tfit bidirectionals None
# Promoter Tfit bidirectionals None
# Intronic Tfit bidirectionals None
# Intergenic Tfit bidirectionals None
Total # dREG bidirectionals None
# Promoter dREG bidirectionals None
# Intronic dREG bidirectionals None
# Intergenic dREG bidirectionals None
Part of Tfit master merge? False
Part of dREG master merge? False