DBNascent | Samples

SRZ5364057 Sample ID 840

**Data sources**
Paper identifier	Franco2018enhancer
SRP accession	SRP102238
GEO accession	GSE96859
Samples	SRR5364057
	SRR5364059

**Technical details**
QC score	4
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	75 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	870 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF10A
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	51
Read depth after trimming	51,056,223
Duplication proportion	0.84519
Proportion reads mapped	0.869
Exon/intron ratio	1.15032
Unique read proportion	0.43444

**Bidirectionals**
Total # Tfit bidirectionals	21611
# Promoter Tfit bidirectionals	4572
# Intronic Tfit bidirectionals	12242
# Intergenic Tfit bidirectionals	3515
Total # dREG bidirectionals	20266
# Promoter dREG bidirectionals	4818
# Intronic dREG bidirectionals	10943
# Intergenic dREG bidirectionals	4008
Part of Tfit master merge?	True
Part of dREG master merge?	True