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SRZ5364060 Sample ID 841
| Paper identifier | Franco2018enhancer |
| SRP accession | SRP102238 |
| GEO accession | GSE96859 |
| Samples | SRR5364060 |
| SRR5364062 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 189 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 5 Mb |
| dREG bidirectional regions | BED file | 3 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Replicates unclear - states that rep3 and rep4 are tech reps of rep1 and rep2, respectively, yet no rep4 exists for this cell type |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 3 |
| Raw read length | 50 |
| Read depth after trimming | 78,719,157 |
| Duplication proportion | 0.57035 |
| Proportion reads mapped | 0.8472 |
| Exon/intron ratio | 3.47311 |
| Unique read proportion | 0.63891 |
| Total # Tfit bidirectionals | 54651 |
| # Promoter Tfit bidirectionals | 4635 |
| # Intronic Tfit bidirectionals | 35934 |
| # Intergenic Tfit bidirectionals | 10134 |
| Total # dREG bidirectionals | 77689 |
| # Promoter dREG bidirectionals | 4288 |
| # Intronic dREG bidirectionals | 53125 |
| # Intergenic dREG bidirectionals | 15801 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |