DBNascent | Samples

SRZ5364067 Sample ID 844

**Data sources**
Paper identifier	Franco2018enhancer
SRP accession	SRP102238
GEO accession	GSE96859
Samples	SRR5364067
	SRR5364069

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	199 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MDA-MB-361
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	50
Read depth after trimming	63,621,168
Duplication proportion	0.47093
Proportion reads mapped	0.9363
Exon/intron ratio	4.97756
Unique read proportion	0.69145

**Bidirectionals**
Total # Tfit bidirectionals	42175
# Promoter Tfit bidirectionals	19391
# Intronic Tfit bidirectionals	14742
# Intergenic Tfit bidirectionals	9284
Total # dREG bidirectionals	35412
# Promoter dREG bidirectionals	8585
# Intronic dREG bidirectionals	15330
# Intergenic dREG bidirectionals	9559
Part of Tfit master merge?	True
Part of dREG master merge?	True