DBNascent | Samples

SRZ5364099 Sample ID 860

**Data sources**
Paper identifier	Franco2018enhancer
SRP accession	SRP102238
GEO accession	GSE96859
Samples	SRR5364099
	SRR5364101

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	165 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MDA-MB-436
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	51
Read depth after trimming	67,999,114
Duplication proportion	0.57945
Proportion reads mapped	0.891
Exon/intron ratio	4.13829
Unique read proportion	0.52362

**Bidirectionals**
Total # Tfit bidirectionals	46163
# Promoter Tfit bidirectionals	18584
# Intronic Tfit bidirectionals	18077
# Intergenic Tfit bidirectionals	10589
Total # dREG bidirectionals	38210
# Promoter dREG bidirectionals	8595
# Intronic dREG bidirectionals	18183
# Intergenic dREG bidirectionals	9772
Part of Tfit master merge?	True
Part of dREG master merge?	True