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SRZ543417 Sample ID 1525
| Paper identifier | Lin2012global |
| SRP accession | SRP014892 |
| GEO accession | GSE40173 |
| Samples | SRR543417 |
| SRR543418 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 91 Mb |
| Stranded gene read counts | TXT file | 915 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 1005 Kb |
| dREG bidirectional regions | BED file | 526 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | pre pro B cell |
| Clone/Individual | |
| Strain | C57BL/6 |
| Genotype | Tcf3 -/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 50 |
| Read depth after trimming | 64,785,523 |
| Duplication proportion | 0.58713 |
| Proportion reads mapped | 0.5512 |
| Exon/intron ratio | 3.49144 |
| Unique read proportion | 0.48454 |
| Total # Tfit bidirectionals | 11769 |
| # Promoter Tfit bidirectionals | 4453 |
| # Intronic Tfit bidirectionals | 4177 |
| # Intergenic Tfit bidirectionals | 1374 |
| Total # dREG bidirectionals | 12161 |
| # Promoter dREG bidirectionals | 4041 |
| # Intronic dREG bidirectionals | 3990 |
| # Intergenic dREG bidirectionals | 2432 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |