DBNascent | Samples

SRZ543417 Sample ID 1525

**Data sources**
Paper identifier	Lin2012global
SRP accession	SRP014892
GEO accession	GSE40173
Samples	SRR543417
	SRR543418

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	91 Mb
Stranded gene read counts	TXT file	915 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1005 Kb
dREG bidirectional regions	BED file	526 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	pre pro B cell
Clone/Individual
Strain	C57BL/6
Genotype	Tcf3 -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	64,785,523
Duplication proportion	0.58713
Proportion reads mapped	0.5512
Exon/intron ratio	3.49144
Unique read proportion	0.48454

**Bidirectionals**
Total # Tfit bidirectionals	11769
# Promoter Tfit bidirectionals	4453
# Intronic Tfit bidirectionals	4177
# Intergenic Tfit bidirectionals	1374
Total # dREG bidirectionals	12161
# Promoter dREG bidirectionals	4041
# Intronic dREG bidirectionals	3990
# Intergenic dREG bidirectionals	2432
Part of Tfit master merge?	True
Part of dREG master merge?	True