DBNascent | Samples

SRZ543419 Sample ID 1525

**Data sources**
Paper identifier	Lin2012global
SRP	SRP014892
Samples	SRR543419
	SRR543420

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	110 Mb
Stranded gene read counts	TXT file	918 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	628 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	pro B cell
Clone/Individual
Strain	C57BL/6
Genotype	Rag1 -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	87,826,925
Duplication proportion	0.6646
Proportion reads mapped	0.606
Exon/intron ratio	3.99671
Unique read proportion	0.41756

**Bidirectionals**
Total # Tfit bidirectionals	14950
# Promoter Tfit bidirectionals	5773
# Intronic Tfit bidirectionals	5303
# Intergenic Tfit bidirectionals	1844
Total # dREG bidirectionals	14476
# Promoter dREG bidirectionals	4435
# Intronic dREG bidirectionals	5055
# Intergenic dREG bidirectionals	3133
Part of Tfit master merge?	True
Part of dREG master merge?	True