DBNascent | Samples

SRZ579299 Sample ID 565

**Data sources**
Paper identifier	Danko2013signaling
SRP accession	SRP015988
GEO accession	GSE41324
Samples	SRR579299
	SRR579300
	SRR579301
	SRR579302
	SRR579303
	SRR579304
	SRR579305
	SRR579306
	SRR579307
	SRR579308
	SRR579309

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	125 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	50
Read depth after trimming	40,550,753
Duplication proportion	0.41003
Proportion reads mapped	0.7626
Exon/intron ratio	4.05853
Unique read proportion	0.68875

**Bidirectionals**
Total # Tfit bidirectionals	34727
# Promoter Tfit bidirectionals	16314
# Intronic Tfit bidirectionals	12728
# Intergenic Tfit bidirectionals	6700
Total # dREG bidirectionals	28320
# Promoter dREG bidirectionals	9875
# Intronic dREG bidirectionals	11609
# Intergenic dREG bidirectionals	6506
Part of Tfit master merge?	True
Part of dREG master merge?	True