DBNascent | Samples

SRZ579310 Sample ID 566

**Data sources**
Paper identifier	Danko2013signaling
SRP accession	SRP015988
GEO accession	GSE41324
Samples	SRR579310
	SRR579311
	SRR579312
	SRR579313
	SRR579314
	SRR579315
	SRR579316
	SRR579317
	SRR579318

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	57 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	602 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	50
Read depth after trimming	26,912,237
Duplication proportion	0.75662
Proportion reads mapped	0.827
Exon/intron ratio	2.3266
Unique read proportion	0.39984

**Bidirectionals**
Total # Tfit bidirectionals	18262
# Promoter Tfit bidirectionals	7747
# Intronic Tfit bidirectionals	7878
# Intergenic Tfit bidirectionals	2279
Total # dREG bidirectionals	13988
# Promoter dREG bidirectionals	8288
# Intronic dREG bidirectionals	4689
# Intergenic dREG bidirectionals	1698
Part of Tfit master merge?	True
Part of dREG master merge?	True