DBNascent | Samples

SRZ579319 Sample ID 567

**Data sources**
Paper identifier	Danko2013signaling
SRP accession	SRP015988
GEO accession	GSE41324
Samples	SRR579319
	SRR579320
	SRR579321
	SRR579322
	SRR579323

**Technical details**
QC score	4
Replicate	3
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	26 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	455 Kb
dREG bidirectional regions	BED file	192 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	50
Read depth after trimming	13,011,410
Duplication proportion	0.86952
Proportion reads mapped	0.7866
Exon/intron ratio	2.58967
Unique read proportion	0.16425

**Bidirectionals**
Total # Tfit bidirectionals	5176
# Promoter Tfit bidirectionals	2575
# Intronic Tfit bidirectionals	1748
# Intergenic Tfit bidirectionals	612
Total # dREG bidirectionals	4471
# Promoter dREG bidirectionals	3396
# Intronic dREG bidirectionals	1015
# Intergenic dREG bidirectionals	428
Part of Tfit master merge?	True
Part of dREG master merge?	True