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SRZ579319 Sample ID 567
| Paper identifier | Danko2013signaling |
| SRP accession | SRP015988 |
| GEO accession | GSE41324 |
| Samples | SRR579319 |
| SRR579320 | |
| SRR579321 | |
| SRR579322 | |
| SRR579323 |
| QC score | 4 |
| Replicate | 3 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 26 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 455 Kb |
| dREG bidirectional regions | BED file | 192 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 13,011,410 |
| Duplication proportion | 0.86952 |
| Proportion reads mapped | 0.7866 |
| Exon/intron ratio | 2.58967 |
| Unique read proportion | 0.16425 |
| Total # Tfit bidirectionals | 5176 |
| # Promoter Tfit bidirectionals | 2575 |
| # Intronic Tfit bidirectionals | 1748 |
| # Intergenic Tfit bidirectionals | 612 |
| Total # dREG bidirectionals | 4471 |
| # Promoter dREG bidirectionals | 3396 |
| # Intronic dREG bidirectionals | 1015 |
| # Intergenic dREG bidirectionals | 428 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |