DBNascent | Samples

SRZ579324 Sample ID 568

**Data sources**
Paper identifier	Danko2013signaling
SRP accession	SRP015988
GEO accession	GSE41324
Samples	SRR579324
	SRR579325
	SRR579326
	SRR579327
	SRR579328
	SRR579329
	SRR579330
	SRR579331
	SRR579332
	SRR579333
	SRR579334

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	154 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-10 min	0 min	10 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	50
Read depth after trimming	46,003,041
Duplication proportion	0.35857
Proportion reads mapped	0.8072
Exon/intron ratio	3.67191
Unique read proportion	0.73606

**Bidirectionals**
Total # Tfit bidirectionals	42865
# Promoter Tfit bidirectionals	17161
# Intronic Tfit bidirectionals	15983
# Intergenic Tfit bidirectionals	10485
Total # dREG bidirectionals	34072
# Promoter dREG bidirectionals	9777
# Intronic dREG bidirectionals	14949
# Intergenic dREG bidirectionals	8790
Part of Tfit master merge?	True
Part of dREG master merge?	True