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SRZ579324 Sample ID 568
| Paper identifier | Danko2013signaling |
| SRP accession | SRP015988 |
| GEO accession | GSE41324 |
| Samples | SRR579324 |
| SRR579325 | |
| SRR579326 | |
| SRR579327 | |
| SRR579328 | |
| SRR579329 | |
| SRR579330 | |
| SRR579331 | |
| SRR579332 | |
| SRR579333 | |
| SRR579334 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 154 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | 17-beta-estradiol (100 nM) | -10 min | 0 min | 10 min |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 50 |
| Read depth after trimming | 46,003,041 |
| Duplication proportion | 0.35857 |
| Proportion reads mapped | 0.8072 |
| Exon/intron ratio | 3.67191 |
| Unique read proportion | 0.73606 |
| Total # Tfit bidirectionals | 42865 |
| # Promoter Tfit bidirectionals | 17161 |
| # Intronic Tfit bidirectionals | 15983 |
| # Intergenic Tfit bidirectionals | 10485 |
| Total # dREG bidirectionals | 34072 |
| # Promoter dREG bidirectionals | 9777 |
| # Intronic dREG bidirectionals | 14949 |
| # Intergenic dREG bidirectionals | 8790 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |