DBNascent | Samples

SRZ579364 Sample ID 574

**Data sources**
Paper identifier	Danko2013signaling
SRP accession	SRP015988
GEO accession	GSE41324
Samples	SRR579364
	SRR579365
	SRR579366
	SRR579367
	SRR579368
	SRR579369

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	82 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	881 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-40 min	0 min	40 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	50
Read depth after trimming	21,231,771
Duplication proportion	0.36645
Proportion reads mapped	0.8377
Exon/intron ratio	2.85446
Unique read proportion	0.6948

**Bidirectionals**
Total # Tfit bidirectionals	28251
# Promoter Tfit bidirectionals	13146
# Intronic Tfit bidirectionals	10698
# Intergenic Tfit bidirectionals	4763
Total # dREG bidirectionals	20258
# Promoter dREG bidirectionals	9325
# Intronic dREG bidirectionals	7980
# Intergenic dREG bidirectionals	3317
Part of Tfit master merge?	True
Part of dREG master merge?	True