DBNascent | Samples

SRZ5861742 Sample ID 1234

**Data sources**
Paper identifier	Kourtis2018oncogenic
SRP accession	SRP113457
GEO accession	GSE101803
Samples	SRR5861742
	SRR5861743

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	not noted in GEO or publication
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	39 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1013 Kb
dREG bidirectional regions	BED file	213 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	CUTLL1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	51
Read depth after trimming	9,543,647
Duplication proportion	0.43306
Proportion reads mapped	0.9592
Exon/intron ratio	3.92929
Unique read proportion	0.55947

**Bidirectionals**
Total # Tfit bidirectionals	11620
# Promoter Tfit bidirectionals	4465
# Intronic Tfit bidirectionals	5146
# Intergenic Tfit bidirectionals	1151
Total # dREG bidirectionals	4947
# Promoter dREG bidirectionals	2673
# Intronic dREG bidirectionals	1607
# Intergenic dREG bidirectionals	636
Part of Tfit master merge?	True
Part of dREG master merge?	True