SRZ5861768 Sample ID 1247

Data sources
Paper identifier Kourtis2018oncogenic
SRP accession SRP113457
GEO accession GSE101803
Samples SRR5861768
SRR5861769
Technical details
QC score 4
Replicate 2
Protocol GRO-seq
Library prep not noted in GEO or publication
Spike-in None
Single/Paired end single
Raw strandedness reverse
Reverse complemented? True
Mapped strandedness forward
Timecourse True
Control/Experimental experimental
Wildtype & Untreated? False
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 44 Mb
Stranded gene read counts TXT file 1 Mb
Unstranded bidirectional read counts TXT file 21 Mb
Tfit bidirectional regions BED file 1 Mb
dREG bidirectional regions BED file 278 Kb
All data files ZIP archive
Cellular details
Organism H. sapiens
Sample type cell line
Cell type CUTLL1
Clone/Individual
Strain
Genotype
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
treatment gamma-secretase inhibitor (1 microM) -4340 min -20 min 3 day
Extended notes
Pipeline info and software versions
Sample notes gamma-secretase inhibitor is Compound E, Alexis Biochemicals
Analysis notes
Sample metrics
Sample QC score 4
Sample NRO score 2
Raw read length 51
Read depth after trimming 9,718,672
Duplication proportion 0.34947
Proportion reads mapped 0.9535
Exon/intron ratio 3.29107
Unique read proportion 0.64265
Bidirectionals
Total # Tfit bidirectionals 13404
# Promoter Tfit bidirectionals 5437
# Intronic Tfit bidirectionals 5705
# Intergenic Tfit bidirectionals 1519
Total # dREG bidirectionals 6466
# Promoter dREG bidirectionals 3541
# Intronic dREG bidirectionals 2145
# Intergenic dREG bidirectionals 800
Part of Tfit master merge? True
Part of dREG master merge? True