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SRZ5861782 Sample ID 1254
| Paper identifier | Kourtis2018oncogenic |
| SRP accession | SRP113457 |
| GEO accession | GSE101803 |
| Samples | SRR5861782 |
| SRR5861783 |
| QC score | 3 |
| Replicate | 3 |
| Protocol | GRO-seq |
| Library prep | not noted in GEO or publication |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | CUTLL1 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | gamma-secretase inhibitor (1 microM) | -4400 min | -80 min | 3 day |
| Pipeline info and software versions | |
| Sample notes | gamma-secretase inhibitor is Compound E, Alexis Biochemicals |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 51 |
| Read depth after trimming | 12,092,224 |
| Duplication proportion | 0.42666 |
| Proportion reads mapped | 0.9535 |
| Exon/intron ratio | 3.784 |
| Unique read proportion | 0.58015 |
| Total # Tfit bidirectionals | 13266 |
| # Promoter Tfit bidirectionals | 5445 |
| # Intronic Tfit bidirectionals | 5230 |
| # Intergenic Tfit bidirectionals | 1716 |
| Total # dREG bidirectionals | 7330 |
| # Promoter dREG bidirectionals | 4009 |
| # Intronic dREG bidirectionals | 2310 |
| # Intergenic dREG bidirectionals | 952 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |