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SRZ611829 Sample ID 1405
| Paper identifier | Kwak2013precise |
| SRP accession | SRP017121 |
| GEO accession | GSE42117 |
| Samples | SRR611829 |
| SRR611830 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | PRO-cap |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 43 Mb |
| Stranded gene read counts | TXT file | 727 Kb |
| All data files | ZIP archive | |
| Organism | D. melanogaster |
| Sample type | cell line |
| Cell type | S2 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 44 |
| Read depth after trimming | 43,997,846 |
| Duplication proportion | 0.88634 |
| Proportion reads mapped | 0.6691 |
| Exon/intron ratio | 2.44288 |
| Unique read proportion | 0.16187 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |