DBNascent | Samples

SRZ6497147 Sample ID 1480

**Data sources**
Paper identifier	Li2018lncrna
SRP accession	SRP131045
GEO accession	GSE109290
Samples	SRR6497147
	SRR6497148

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	106 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	971 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	BJ
Clone/Individual
Strain
Genotype	tamoxifen-inducible oncogenic H-RasV12
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Previously in db until 6/15/2021 as Elkon2018unpublished, scripts changed but all previous documentation reflects previous id

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	65
Read depth after trimming	54,379,739
Duplication proportion	0.67171
Proportion reads mapped	0.9515
Exon/intron ratio	2.58569
Unique read proportion	0.41705

**Bidirectionals**
Total # Tfit bidirectionals	36193
# Promoter Tfit bidirectionals	13609
# Intronic Tfit bidirectionals	14912
# Intergenic Tfit bidirectionals	7100
Total # dREG bidirectionals	22354
# Promoter dREG bidirectionals	8519
# Intronic dREG bidirectionals	8976
# Intergenic dREG bidirectionals	4822
Part of Tfit master merge?	True
Part of dREG master merge?	True