DBNascent | Samples

SRZ6497149 Sample ID 1481

**Data sources**
Paper identifier	Li2018lncrna
SRP accession	SRP131045
GEO accession	GSE109290
Samples	SRR6497149
	SRR6497150

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	129 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	BJ
Clone/Individual
Strain
Genotype	tamoxifen-inducible oncogenic H-RasV12
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Previously in db until 6/15/2021 as Elkon2018unpublished, scripts changed but all previous documentation reflects previous id

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	65
Read depth after trimming	76,576,582
Duplication proportion	0.7219
Proportion reads mapped	0.9546
Exon/intron ratio	2.58142
Unique read proportion	0.40237

**Bidirectionals**
Total # Tfit bidirectionals	40732
# Promoter Tfit bidirectionals	14669
# Intronic Tfit bidirectionals	16921
# Intergenic Tfit bidirectionals	8575
Total # dREG bidirectionals	26302
# Promoter dREG bidirectionals	8778
# Intronic dREG bidirectionals	10963
# Intergenic dREG bidirectionals	6227
Part of Tfit master merge?	True
Part of dREG master merge?	True