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SRZ6497153 Sample ID 1483
| Paper identifier | Li2018lncrna |
| SRP accession | SRP131045 |
| GEO accession | GSE109290 |
| Samples | SRR6497153 |
| SRR6497154 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | BJ |
| Clone/Individual | |
| Strain | |
| Genotype | tamoxifen-inducible oncogenic H-RasV12 |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | hydroxytamoxifen (100 nM) | -14 day | 0 day | 14 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Previously in db until 6/15/2021 as Elkon2018unpublished, scripts changed but all previous documentation reflects previous id |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 65 |
| Read depth after trimming | 62,398,968 |
| Duplication proportion | 0.59388 |
| Proportion reads mapped | 0.9393 |
| Exon/intron ratio | 2.15581 |
| Unique read proportion | 0.5076 |
| Total # Tfit bidirectionals | 40771 |
| # Promoter Tfit bidirectionals | 13297 |
| # Intronic Tfit bidirectionals | 16762 |
| # Intergenic Tfit bidirectionals | 10038 |
| Total # dREG bidirectionals | 28222 |
| # Promoter dREG bidirectionals | 8305 |
| # Intronic dREG bidirectionals | 11779 |
| # Intergenic dREG bidirectionals | 7673 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |