DBNascent | Samples

SRZ6497153 Sample ID 1483

**Data sources**
Paper identifier	Li2018lncrna
SRP accession	SRP131045
GEO accession	GSE109290
Samples	SRR6497153
	SRR6497154

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	144 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	BJ
Clone/Individual
Strain
Genotype	tamoxifen-inducible oncogenic H-RasV12
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	hydroxytamoxifen (100 nM)	-14 day	0 day	14 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Previously in db until 6/15/2021 as Elkon2018unpublished, scripts changed but all previous documentation reflects previous id

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	65
Read depth after trimming	62,398,968
Duplication proportion	0.59388
Proportion reads mapped	0.9393
Exon/intron ratio	2.15581
Unique read proportion	0.5076

**Bidirectionals**
Total # Tfit bidirectionals	40771
# Promoter Tfit bidirectionals	13297
# Intronic Tfit bidirectionals	16762
# Intergenic Tfit bidirectionals	10038
Total # dREG bidirectionals	28222
# Promoter dREG bidirectionals	8305
# Intronic dREG bidirectionals	11779
# Intergenic dREG bidirectionals	7673
Part of Tfit master merge?	True
Part of dREG master merge?	True