DBNascent | Samples

SRZ6497157 Sample ID 1485

**Data sources**
Paper identifier	Li2018lncrna
SRP accession	SRP131045
GEO accession	GSE109290
Samples	SRR6497157
	SRR6497158

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	155 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	TIG-3
Clone/Individual
Strain
Genotype	tamoxifen-inducible oncogenic H-RasV12
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	hydroxytamoxifen (100 nM)	-14 day	0 day	14 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Previously in db until 6/15/2021 as Elkon2018unpublished, scripts changed but all previous documentation reflects previous id

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	65
Read depth after trimming	72,565,270
Duplication proportion	0.65142
Proportion reads mapped	0.9468
Exon/intron ratio	2.25919
Unique read proportion	0.52846

**Bidirectionals**
Total # Tfit bidirectionals	49929
# Promoter Tfit bidirectionals	13091
# Intronic Tfit bidirectionals	20938
# Intergenic Tfit bidirectionals	14983
Total # dREG bidirectionals	34647
# Promoter dREG bidirectionals	8608
# Intronic dREG bidirectionals	14829
# Intergenic dREG bidirectionals	10708
Part of Tfit master merge?	True
Part of dREG master merge?	True