DBNascent | Samples

SRZ7184276 Sample ID 2846

**Data sources**
Paper identifier	Zhao2019myod
SRP accession	SRP148464
GEO accession	GSE114657
Samples	SRR7184276
	SRR7184277

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	87 Mb
Stranded gene read counts	TXT file	925 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	5 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	C2C12
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Undifferentiated myoblasts; labeled GRO-seq, but they used 'biotin-11-UTP'
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	4
Raw read length	75
Read depth after trimming	42,486,367
Duplication proportion	0.56854
Proportion reads mapped	0.8121
Exon/intron ratio	7.16274
Unique read proportion	0.45038

**Bidirectionals**
Total # Tfit bidirectionals	58236
# Promoter Tfit bidirectionals	13189
# Intronic Tfit bidirectionals	22780
# Intergenic Tfit bidirectionals	19203
Total # dREG bidirectionals	45132
# Promoter dREG bidirectionals	8070
# Intronic dREG bidirectionals	18580
# Intergenic dREG bidirectionals	15209
Part of Tfit master merge?	True
Part of dREG master merge?	True