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SRZ7184278 Sample ID 2847
| Paper identifier | Zhao2019myod |
| SRP accession | SRP148464 |
| GEO accession | GSE114657 |
| Samples | SRR7184278 |
| SRR7184279 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 71 Mb |
| Stranded gene read counts | TXT file | 928 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | C2C12 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | myotube differentiation protocol | -48 hr | 0 hr | 2 day |
| Pipeline info and software versions | |
| Sample notes | Labeled GRO-seq, but they used 'biotin-11-UTP' |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 4 |
| Raw read length | 75 |
| Read depth after trimming | 52,072,334 |
| Duplication proportion | 0.7723 |
| Proportion reads mapped | 0.868 |
| Exon/intron ratio | 8.06879 |
| Unique read proportion | 0.37463 |
| Total # Tfit bidirectionals | 45974 |
| # Promoter Tfit bidirectionals | 10961 |
| # Intronic Tfit bidirectionals | 18583 |
| # Intergenic Tfit bidirectionals | 13818 |
| Total # dREG bidirectionals | 39527 |
| # Promoter dREG bidirectionals | 8152 |
| # Intronic dREG bidirectionals | 16250 |
| # Intergenic dREG bidirectionals | 12113 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |