DBNascent | Samples

SRZ7458419 Sample ID 2487

**Data sources**
Paper identifier	Tome2018single
SRP accession	SRP151707
GEO accession	GSE116472
Samples	SRR7458419
	SRR7458420

**Technical details**
QC score	3
Replicate	2
Protocol	PRO-cap variant
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	54 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	K562
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	CoPRO - paired end PRO-cap; Capped RNA selection; no PCR amplification
Analysis notes	Many pretty dirty, high adapter contamination

**Sample metrics**
Sample QC score	3
Sample NRO score	5
Raw read length	47
Read depth after trimming	16,833,743
Duplication proportion	0.40807
Proportion reads mapped	0.6363
Exon/intron ratio	11.2404
Unique read proportion	0.39374

**Bidirectionals**
Total # Tfit bidirectionals	27745
# Promoter Tfit bidirectionals	11876
# Intronic Tfit bidirectionals	10941
# Intergenic Tfit bidirectionals	5892
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	True
Part of dREG master merge?	True