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SRZ7458421 Sample ID 2488
| Paper identifier | Tome2018single |
| SRP accession | SRP151707 |
| GEO accession | GSE116472 |
| Samples | SRR7458421 |
| SRR7458422 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | PRO-cap variant |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | K562 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | CoPRO - paired end PRO-cap; Uncapped RNA selection; no PCR amplification |
| Analysis notes | Many pretty dirty, high adapter contamination |
| Sample QC score | 1 |
| Sample NRO score | 1 |
| Raw read length | 47 |
| Read depth after trimming | 29,114,062 |
| Duplication proportion | 0.13419 |
| Proportion reads mapped | 0.7433 |
| Exon/intron ratio | 2.86387 |
| Unique read proportion | 0.79034 |
| Total # Tfit bidirectionals | 12732 |
| # Promoter Tfit bidirectionals | 5772 |
| # Intronic Tfit bidirectionals | 5036 |
| # Intergenic Tfit bidirectionals | 1807 |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |