DBNascent | Samples

SRZ7741173 Sample ID 9

**Data sources**
Paper identifier	Aeby2020decapping
SRP accession	SRP158617
GEO accession	GSE118930
Samples	SRR7741173
	SRR7741174

**Technical details**
QC score	1
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	110 Mb
Stranded gene read counts	TXT file	921 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	clone J15
Strain	C57BL/6J x CAST/EiJ
Genotype	Dcp1a -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Differentiation inhibited by 50 U/mL ESGRO leukaemia inhibitory factor (LIF); Library prep cites Kwak2013 and Mahat2016
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	51
Read depth after trimming	24,996,973
Duplication proportion	0.27224
Proportion reads mapped	0.8033
Exon/intron ratio	4.38588
Unique read proportion	0.64148

**Bidirectionals**
Total # Tfit bidirectionals	52932
# Promoter Tfit bidirectionals	11486
# Intronic Tfit bidirectionals	18689
# Intergenic Tfit bidirectionals	18924
Total # dREG bidirectionals	37547
# Promoter dREG bidirectionals	8495
# Intronic dREG bidirectionals	13095
# Intergenic dREG bidirectionals	13004
Part of Tfit master merge?	True
Part of dREG master merge?	True