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SRZ7741173 Sample ID 9
| Paper identifier | Aeby2020decapping |
| SRP accession | SRP158617 |
| GEO accession | GSE118930 |
| Samples | SRR7741173 |
| SRR7741174 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 110 Mb |
| Stranded gene read counts | TXT file | 921 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | clone J15 |
| Strain | C57BL/6J x CAST/EiJ |
| Genotype | Dcp1a -/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Differentiation inhibited by 50 U/mL ESGRO leukaemia inhibitory factor (LIF); Library prep cites Kwak2013 and Mahat2016 |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 51 |
| Read depth after trimming | 24,996,973 |
| Duplication proportion | 0.27224 |
| Proportion reads mapped | 0.8033 |
| Exon/intron ratio | 4.38588 |
| Unique read proportion | 0.64148 |
| Total # Tfit bidirectionals | 52932 |
| # Promoter Tfit bidirectionals | 11486 |
| # Intronic Tfit bidirectionals | 18689 |
| # Intergenic Tfit bidirectionals | 18924 |
| Total # dREG bidirectionals | 37547 |
| # Promoter dREG bidirectionals | 8495 |
| # Intronic dREG bidirectionals | 13095 |
| # Intergenic dREG bidirectionals | 13004 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |