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SRZ7746900 Sample ID 2776
| Paper identifier | Zhang2018timing |
| SRP accession | SRP158674 |
| GEO accession | GSE118957 |
| Samples | SRR7746900 |
| SRR7746901 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq variant |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | KBM7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | triptolide (1 microM) | -10 min | 0 min | 10 min |
| Pipeline info and software versions | |
| Sample notes | time variant PRO-seq; 3 min run-on time |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 76 |
| Read depth after trimming | 27,506,689 |
| Duplication proportion | 0.36175 |
| Proportion reads mapped | 0.9072 |
| Exon/intron ratio | 3.88591 |
| Unique read proportion | 0.71284 |
| Total # Tfit bidirectionals | 26440 |
| # Promoter Tfit bidirectionals | 11620 |
| # Intronic Tfit bidirectionals | 10592 |
| # Intergenic Tfit bidirectionals | 4138 |
| Total # dREG bidirectionals | 19925 |
| # Promoter dREG bidirectionals | 8280 |
| # Intronic dREG bidirectionals | 7821 |
| # Intergenic dREG bidirectionals | 3373 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |