DBNascent | Samples

SRZ7746904 Sample ID 2778

**Data sources**
Paper identifier	Zhang2018timing
SRP accession	SRP158674
GEO accession	GSE118957
Samples	SRR7746904
	SRR7746905

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq variant
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	63 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	609 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	KBM7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-10 min	0 min	10 min

**Extended notes**
Pipeline info and software versions
Sample notes	time variant PRO-seq; 3 min run-on time
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	76
Read depth after trimming	20,191,885
Duplication proportion	0.60462
Proportion reads mapped	0.9044
Exon/intron ratio	3.86416
Unique read proportion	0.5009

**Bidirectionals**
Total # Tfit bidirectionals	19277
# Promoter Tfit bidirectionals	6584
# Intronic Tfit bidirectionals	8800
# Intergenic Tfit bidirectionals	2841
Total # dREG bidirectionals	14147
# Promoter dREG bidirectionals	7369
# Intronic dREG bidirectionals	5100
# Intergenic dREG bidirectionals	1914
Part of Tfit master merge?	True
Part of dREG master merge?	True