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SRZ7746906 Sample ID 2779
| Paper identifier | Zhang2018timing |
| SRP accession | SRP158674 |
| GEO accession | GSE118957 |
| Samples | SRR7746906 |
| SRR7746907 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq variant |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | KBM7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | -10 min | 0 min | 10 min |
| Pipeline info and software versions | |
| Sample notes | time variant PRO-seq; 6 min run-on time |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 76 |
| Read depth after trimming | 26,718,631 |
| Duplication proportion | 0.38492 |
| Proportion reads mapped | 0.9222 |
| Exon/intron ratio | 4.21436 |
| Unique read proportion | 0.71637 |
| Total # Tfit bidirectionals | 29106 |
| # Promoter Tfit bidirectionals | 10616 |
| # Intronic Tfit bidirectionals | 13061 |
| # Intergenic Tfit bidirectionals | 4635 |
| Total # dREG bidirectionals | 20295 |
| # Promoter dREG bidirectionals | 8318 |
| # Intronic dREG bidirectionals | 8023 |
| # Intergenic dREG bidirectionals | 3562 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |