Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRZ7879156 Sample ID 2281
| Paper identifier | Sheridan2019widespread |
| SRP accession | SRP162163 |
| GEO accession | GSE120201 |
| Samples | SRR7879156 |
| SRR7879157 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HEK293T Flp-In |
| Clone/Individual | |
| Strain | |
| Genotype | dox-inducible TFIIS D282A, E283A (Flp knock-in) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | doxycycline (2 microg/mL) | -1 day | 0 day | 1 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 2 |
| Raw read length | 151 |
| Read depth after trimming | 34,097,578 |
| Duplication proportion | 0.88567 |
| Proportion reads mapped | 0.8787 |
| Exon/intron ratio | 3.50891 |
| Unique read proportion | 0.19891 |
| Total # Tfit bidirectionals | 24421 |
| # Promoter Tfit bidirectionals | 10050 |
| # Intronic Tfit bidirectionals | 11145 |
| # Intergenic Tfit bidirectionals | 1632 |
| Total # dREG bidirectionals | 9500 |
| # Promoter dREG bidirectionals | 5246 |
| # Intronic dREG bidirectionals | 2988 |
| # Intergenic dREG bidirectionals | 943 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |