SRZ7879156 Sample ID 2281

Data sources
Paper identifier Sheridan2019widespread
SRP accession SRP162163
GEO accession GSE120201
Samples SRR7879156
SRR7879157
Technical details
QC score 4
Replicate 2
Protocol GRO-seq
Library prep ligation
Spike-in None
Single/Paired end single
Raw strandedness forward
Reverse complemented? False
Mapped strandedness forward
Timecourse False
Control/Experimental experimental
Wildtype & Untreated? False
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 34 Mb
Stranded gene read counts TXT file 1 Mb
Unstranded bidirectional read counts TXT file 21 Mb
Tfit bidirectional regions BED file 2 Mb
dREG bidirectional regions BED file 410 Kb
All data files ZIP archive
Cellular details
Organism H. sapiens
Sample type cell line
Cell type HEK293T Flp-In
Clone/Individual
Strain
Genotype dox-inducible TFIIS D282A, E283A (Flp knock-in)
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
treatment doxycycline (2 microg/mL) -1 day 0 day 1 day
Extended notes
Pipeline info and software versions
Sample notes
Analysis notes
Sample metrics
Sample QC score 4
Sample NRO score 2
Raw read length 151
Read depth after trimming 34,097,578
Duplication proportion 0.88567
Proportion reads mapped 0.8787
Exon/intron ratio 3.50891
Unique read proportion 0.19891
Bidirectionals
Total # Tfit bidirectionals 24421
# Promoter Tfit bidirectionals 10050
# Intronic Tfit bidirectionals 11145
# Intergenic Tfit bidirectionals 1632
Total # dREG bidirectionals 9500
# Promoter dREG bidirectionals 5246
# Intronic dREG bidirectionals 2988
# Intergenic dREG bidirectionals 943
Part of Tfit master merge? True
Part of dREG master merge? True