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SRZ7879156 Sample ID 2281
Paper identifier | Sheridan2019widespread |
SRP accession | SRP162163 |
GEO accession | GSE120201 |
Samples | SRR7879156 |
SRR7879157 |
QC score | 4 |
Replicate | 2 |
Protocol | GRO-seq |
Library prep | ligation |
Spike-in | None |
Single/Paired end | single |
Raw strandedness | forward |
Reverse complemented? | False |
Mapped strandedness | forward |
Timecourse | False |
Control/Experimental | experimental |
Wildtype & Untreated? | False |
Outlier | No |
Unusable | No |
TDF visualization file | TDF file | 34 Mb |
Stranded gene read counts | TXT file | 1 Mb |
Unstranded bidirectional read counts | TXT file | 21 Mb |
Tfit bidirectional regions | BED file | 2 Mb |
dREG bidirectional regions | BED file | 410 Kb |
All data files | ZIP archive |
Organism | H. sapiens |
Sample type | cell line |
Cell type | HEK293T Flp-In |
Clone/Individual | |
Strain | |
Genotype | dox-inducible TFIIS D282A, E283A (Flp knock-in) |
Construct |
Condition type | Treatment | Start time | End time | Duration |
treatment | doxycycline (2 microg/mL) | -1 day | 0 day | 1 day |
Pipeline info and software versions | |
Sample notes | |
Analysis notes |
Sample QC score | 4 |
Sample NRO score | 2 |
Raw read length | 151 |
Read depth after trimming | 34,097,578 |
Duplication proportion | 0.88567 |
Proportion reads mapped | 0.8787 |
Exon/intron ratio | 3.50891 |
Unique read proportion | 0.19891 |
Total # Tfit bidirectionals | 24421 |
# Promoter Tfit bidirectionals | 10050 |
# Intronic Tfit bidirectionals | 11145 |
# Intergenic Tfit bidirectionals | 1632 |
Total # dREG bidirectionals | 9500 |
# Promoter dREG bidirectionals | 5246 |
# Intronic dREG bidirectionals | 2988 |
# Intergenic dREG bidirectionals | 943 |
Part of Tfit master merge? | True |
Part of dREG master merge? | True |