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SRZ7879160 Sample ID 2283
| Paper identifier | Sheridan2019widespread |
| SRP accession | SRP162163 |
| GEO accession | GSE120201 |
| Samples | SRR7879160 |
| SRR7879161 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 37 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 545 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HEK293T Flp-In |
| Clone/Individual | |
| Strain | |
| Genotype | dox-inducible TFIIS D282A, E283A (Flp knock-in) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 2 |
| Raw read length | 151 |
| Read depth after trimming | 30,458,510 |
| Duplication proportion | 0.84612 |
| Proportion reads mapped | 0.8807 |
| Exon/intron ratio | 3.87724 |
| Unique read proportion | 0.20302 |
| Total # Tfit bidirectionals | 26148 |
| # Promoter Tfit bidirectionals | 11122 |
| # Intronic Tfit bidirectionals | 11271 |
| # Intergenic Tfit bidirectionals | 2135 |
| Total # dREG bidirectionals | 12617 |
| # Promoter dREG bidirectionals | 6661 |
| # Intronic dREG bidirectionals | 3975 |
| # Intergenic dREG bidirectionals | 1330 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |