DBNascent | Samples

SRZ7879179 Sample ID 2287

**Data sources**
Paper identifier	Sheridan2019widespread
SRP accession	SRP162163
GEO accession	GSE120201
Samples	SRR7879179
	SRR7879180
	SRR7879181

**Technical details**
QC score	3
Replicate	2
Protocol	NET-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	69 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	810 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293T Flp-In
Clone/Individual
Strain
Genotype	dox-inducible TFIIS D282A, E283A (Flp knock-in)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	151
Read depth after trimming	29,897,175
Duplication proportion	0.65928
Proportion reads mapped	0.7442
Exon/intron ratio	4.68541
Unique read proportion	0.48774

**Bidirectionals**
Total # Tfit bidirectionals	31656
# Promoter Tfit bidirectionals	14268
# Intronic Tfit bidirectionals	12790
# Intergenic Tfit bidirectionals	3634
Total # dREG bidirectionals	18691
# Promoter dREG bidirectionals	9059
# Intronic dREG bidirectionals	6624
# Intergenic dREG bidirectionals	2422
Part of Tfit master merge?	True
Part of dREG master merge?	True