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SRZ826209 Sample ID 1421
| Paper identifier | Lam2013rev |
| SRP accession | SRP021025 |
| GEO accession | GSE45914 |
| Samples | SRR826209 |
| SRR826210 | |
| SRR826211 | |
| SRR826212 | |
| SRR826213 | |
| SRR826214 | |
| SRR826215 | |
| SRR826216 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 180 Mb |
| Stranded gene read counts | TXT file | 931 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | bone marrow derived macrophage |
| Clone/Individual | |
| Strain | C57BL/6 |
| Genotype | Rev-erb-alpha fl/fl; Rev-erb-beta fl/fl |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Preseq required separate run with -D flag |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 30 |
| Read depth after trimming | 121,741,863 |
| Duplication proportion | 0.7594 |
| Proportion reads mapped | 0.6797 |
| Exon/intron ratio | 2.63791 |
| Unique read proportion | 0.58446 |
| Total # Tfit bidirectionals | 31819 |
| # Promoter Tfit bidirectionals | 10976 |
| # Intronic Tfit bidirectionals | 10584 |
| # Intergenic Tfit bidirectionals | 7405 |
| Total # dREG bidirectionals | 26413 |
| # Promoter dREG bidirectionals | 6860 |
| # Intronic dREG bidirectionals | 10339 |
| # Intergenic dREG bidirectionals | 7183 |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |