DBNascent | Samples

SRZ826209 Sample ID 1421

**Data sources**
Paper identifier	Lam2013rev
SRP accession	SRP021025
GEO accession	GSE45914
Samples	SRR826209
	SRR826210
	SRR826211
	SRR826212
	SRR826213
	SRR826214
	SRR826215
	SRR826216

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	180 Mb
Stranded gene read counts	TXT file	931 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	bone marrow derived macrophage
Clone/Individual
Strain	C57BL/6
Genotype	Rev-erb-alpha fl/fl; Rev-erb-beta fl/fl
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Preseq required separate run with -D flag

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	30
Read depth after trimming	121,741,863
Duplication proportion	0.7594
Proportion reads mapped	0.6797
Exon/intron ratio	2.63791
Unique read proportion	0.58446

**Bidirectionals**
Total # Tfit bidirectionals	31819
# Promoter Tfit bidirectionals	10976
# Intronic Tfit bidirectionals	10584
# Intergenic Tfit bidirectionals	7405
Total # dREG bidirectionals	26413
# Promoter dREG bidirectionals	6860
# Intronic dREG bidirectionals	10339
# Intergenic dREG bidirectionals	7183
Part of Tfit master merge?	False
Part of dREG master merge?	False