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SRZ826217 Sample ID 1422
| Paper identifier | Lam2013rev |
| SRP accession | SRP021025 |
| GEO accession | GSE45914 |
| Samples | SRR826217 |
| SRR826218 | |
| SRR826219 | |
| SRR826220 | |
| SRR826221 | |
| SRR826222 | |
| SRR826223 | |
| SRR826224 | |
| SRR868693 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 173 Mb |
| Stranded gene read counts | TXT file | 934 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | bone marrow derived macrophage |
| Clone/Individual | |
| Strain | C57BL/6 |
| Genotype | Rev-erb-alpha fl/fl; Rev-erb-beta fl/fl; Tie2-Cre |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Preseq required separate run with -D flag |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 1 |
| Read depth after trimming | 185,732,020 |
| Duplication proportion | 0.86157 |
| Proportion reads mapped | 0.6543 |
| Exon/intron ratio | 2.73525 |
| Unique read proportion | 0.50218 |
| Total # Tfit bidirectionals | 30148 |
| # Promoter Tfit bidirectionals | 10047 |
| # Intronic Tfit bidirectionals | 10153 |
| # Intergenic Tfit bidirectionals | 7006 |
| Total # dREG bidirectionals | 24219 |
| # Promoter dREG bidirectionals | 6574 |
| # Intronic dREG bidirectionals | 9200 |
| # Intergenic dREG bidirectionals | 6445 |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |