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SRZ826225 Sample ID 1423
Paper identifier | Lam2013rev |
SRP accession | SRP021025 |
GEO accession | GSE45914 |
Samples | SRR826226 |
QC score | 3 |
Replicate | 1 |
Protocol | GRO-cap |
Library prep | circularization |
Spike-in | None |
Single/Paired end | single |
Raw strandedness | forward |
Reverse complemented? | False |
Mapped strandedness | forward |
Timecourse | False |
Control/Experimental | control |
Wildtype & Untreated? | True |
Outlier | No |
Unusable | No |
TDF visualization file | TDF file | 50 Mb |
Stranded gene read counts | TXT file | |
Unstranded bidirectional read counts | TXT file | |
Tfit bidirectional regions | BED file | |
dREG bidirectional regions | BED file | |
All data files | ZIP archive |
Organism | M. musculus |
Sample type | cell line |
Cell type | RAW264.7 |
Clone/Individual | |
Strain | |
Genotype | |
Construct |
Condition type | Treatment | Start time | End time | Duration |
no treatment | None | None | None |
Pipeline info and software versions | |
Sample notes | |
Analysis notes | Preseq required separate run with -D flag |
Sample QC score | 3 |
Sample NRO score | 3 |
Raw read length | 50 |
Read depth after trimming | 24,049,802 |
Duplication proportion | 0.75146 |
Proportion reads mapped | 0.8579 |
Exon/intron ratio | 6.35026 |
Unique read proportion | 0.37834 |
Total # Tfit bidirectionals | None |
# Promoter Tfit bidirectionals | None |
# Intronic Tfit bidirectionals | None |
# Intergenic Tfit bidirectionals | None |
Total # dREG bidirectionals | None |
# Promoter dREG bidirectionals | None |
# Intronic dREG bidirectionals | None |
# Intergenic dREG bidirectionals | None |
Part of Tfit master merge? | False |
Part of dREG master merge? | False |