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SRZ826225 Sample ID 1423
| Paper identifier | Lam2013rev |
| SRP accession | SRP021025 |
| GEO accession | GSE45914 |
| Samples | SRR826226 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | GRO-cap |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 50 Mb |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | RAW264.7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Preseq required separate run with -D flag |
| Sample QC score | 3 |
| Sample NRO score | 3 |
| Raw read length | 50 |
| Read depth after trimming | 24,049,802 |
| Duplication proportion | 0.75146 |
| Proportion reads mapped | 0.8579 |
| Exon/intron ratio | 6.35026 |
| Unique read proportion | 0.37834 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |