SRZ826225 Sample ID 1423

Data sources
Paper identifier Lam2013rev
SRP accession SRP021025
GEO accession GSE45914
Samples SRR826226
Technical details
QC score 3
Replicate 1
Protocol GRO-cap
Library prep circularization
Spike-in None
Single/Paired end single
Raw strandedness forward
Reverse complemented? False
Mapped strandedness forward
Timecourse False
Control/Experimental control
Wildtype & Untreated? True
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 50 Mb
Stranded gene read counts TXT file
Unstranded bidirectional read counts TXT file
Tfit bidirectional regions BED file
dREG bidirectional regions BED file
All data files ZIP archive
Cellular details
Organism M. musculus
Sample type cell line
Cell type RAW264.7
Clone/Individual
Strain
Genotype
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
no treatment None None None
Extended notes
Pipeline info and software versions
Sample notes
Analysis notes Preseq required separate run with -D flag
Sample metrics
Sample QC score 3
Sample NRO score 3
Raw read length 50
Read depth after trimming 24,049,802
Duplication proportion 0.75146
Proportion reads mapped 0.8579
Exon/intron ratio 6.35026
Unique read proportion 0.37834
Bidirectionals
Total # Tfit bidirectionals None
# Promoter Tfit bidirectionals None
# Intronic Tfit bidirectionals None
# Intergenic Tfit bidirectionals None
Total # dREG bidirectionals None
# Promoter dREG bidirectionals None
# Intronic dREG bidirectionals None
# Intergenic dREG bidirectionals None
Part of Tfit master merge? False
Part of dREG master merge? False