DBNascent | Samples

SRZ8283303 Sample ID 2748

**Data sources**
Paper identifier	Yu2020negative
SRP accession	SRP172558
GEO accession	GSE123370
Samples	SRR8283303
	SRR8283304

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 forward
Reverse complemented?	True
Mapped strandedness	read1 forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	56 Mb
Stranded gene read counts	TXT file	915 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	753 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	bone marrow derived macrophage
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Replicates not explicitly stated
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	3
Raw read length	150
Read depth after trimming	24,283,633
Duplication proportion	0.45821
Proportion reads mapped	0.7065
Exon/intron ratio	5.13474
Unique read proportion	0.48679

**Bidirectionals**
Total # Tfit bidirectionals	25033
# Promoter Tfit bidirectionals	9666
# Intronic Tfit bidirectionals	8144
# Intergenic Tfit bidirectionals	3852
Total # dREG bidirectionals	17316
# Promoter dREG bidirectionals	5633
# Intronic dREG bidirectionals	5665
# Intergenic dREG bidirectionals	3253
Part of Tfit master merge?	True
Part of dREG master merge?	True