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SRZ8795391 Sample ID 1268
| Paper identifier | Kriaucionis2019unpublished |
| SRP accession | SRP189657 |
| GEO accession | GSE128951 |
| Samples | SRR8795391 |
| SRR8795392 | |
| SRR8795393 | |
| SRR8795394 | |
| SRR8795395 | |
| SRR8795396 | |
| SRR8795397 | |
| SRR8795398 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | PRO-cap |
| Library prep | ligation |
| Spike-in | G. gallus |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 45 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HEK293T Flp-In |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct | dox-inducible Tet-CD-GFP |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | 5-aza-2'-deoxycytidine (880 nM) | -2 day | 0 day | 2 day |
| Pipeline info and software versions | |
| Sample notes | Not clear what construct is or whether it's genomically integrated, but it may be the catalytic domain of Tet1 or another human Tet protein (not published or detailed in GEO) |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 5 |
| Raw read length | 35 |
| Read depth after trimming | 38,438,107 |
| Duplication proportion | 0.81027 |
| Proportion reads mapped | 0.5605 |
| Exon/intron ratio | 17.6562 |
| Unique read proportion | 0.31584 |
| Total # Tfit bidirectionals | 31011 |
| # Promoter Tfit bidirectionals | 14074 |
| # Intronic Tfit bidirectionals | 12001 |
| # Intergenic Tfit bidirectionals | 6055 |
| Total # dREG bidirectionals | 25468 |
| # Promoter dREG bidirectionals | 10852 |
| # Intronic dREG bidirectionals | 10136 |
| # Intergenic dREG bidirectionals | 4262 |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |