Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRZ9007617 Sample ID 709
Paper identifier | Etchegaray2019histone |
SRP accession | SRP194939 |
GEO accession | GSE130691 |
Samples | SRR9007617 |
SRR9007618 |
QC score | 1 |
Replicate | 2 |
Protocol | PRO-seq |
Library prep | ligation |
Spike-in | D. melanogaster |
Single/Paired end | paired |
Raw strandedness | read1 reverse |
Reverse complemented? | False |
Mapped strandedness | read1 reverse |
Timecourse | False |
Control/Experimental | control |
Wildtype & Untreated? | True |
Outlier | No |
Unusable | No |
TDF visualization file | TDF file | 313 Mb |
Stranded gene read counts | TXT file | 935 Kb |
Unstranded bidirectional read counts | TXT file | 17 Mb |
Tfit bidirectional regions | BED file | 3 Mb |
dREG bidirectional regions | BED file | 2 Mb |
All data files | ZIP archive |
Organism | M. musculus |
Sample type | cell line |
Cell type | ESC |
Clone/Individual | |
Strain | 129/Sv |
Genotype | |
Construct |
Condition type | Treatment | Start time | End time | Duration |
no treatment | None | None | None |
Pipeline info and software versions | |
Sample notes | |
Analysis notes | Ran qc redo nextflow |
Sample QC score | 1 |
Sample NRO score | 2 |
Raw read length | 80 |
Read depth after trimming | 112,592,586 |
Duplication proportion | 0.41945 |
Proportion reads mapped | 0.6848 |
Exon/intron ratio | 4.43559 |
Unique read proportion | 0.75169 |
Total # Tfit bidirectionals | 30539 |
# Promoter Tfit bidirectionals | 9269 |
# Intronic Tfit bidirectionals | 9689 |
# Intergenic Tfit bidirectionals | 9236 |
Total # dREG bidirectionals | 37551 |
# Promoter dREG bidirectionals | 6879 |
# Intronic dREG bidirectionals | 14212 |
# Intergenic dREG bidirectionals | 12587 |
Part of Tfit master merge? | True |
Part of dREG master merge? | True |