SRZ9007617 Sample ID 709

Data sources
Paper identifier Etchegaray2019histone
SRP accession SRP194939
GEO accession GSE130691
Samples SRR9007617
SRR9007618
Technical details
QC score 1
Replicate 2
Protocol PRO-seq
Library prep ligation
Spike-in D. melanogaster
Single/Paired end paired
Raw strandedness read1 reverse
Reverse complemented? False
Mapped strandedness read1 reverse
Timecourse False
Control/Experimental control
Wildtype & Untreated? True
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 313 Mb
Stranded gene read counts TXT file 935 Kb
Unstranded bidirectional read counts TXT file 17 Mb
Tfit bidirectional regions BED file 3 Mb
dREG bidirectional regions BED file 2 Mb
All data files ZIP archive
Cellular details
Organism M. musculus
Sample type cell line
Cell type ESC
Clone/Individual
Strain 129/Sv
Genotype
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
no treatment None None None
Extended notes
Pipeline info and software versions
Sample notes
Analysis notes Ran qc redo nextflow
Sample metrics
Sample QC score 1
Sample NRO score 2
Raw read length 80
Read depth after trimming 112,592,586
Duplication proportion 0.41945
Proportion reads mapped 0.6848
Exon/intron ratio 4.43559
Unique read proportion 0.75169
Bidirectionals
Total # Tfit bidirectionals 30539
# Promoter Tfit bidirectionals 9269
# Intronic Tfit bidirectionals 9689
# Intergenic Tfit bidirectionals 9236
Total # dREG bidirectionals 37551
# Promoter dREG bidirectionals 6879
# Intronic dREG bidirectionals 14212
# Intergenic dREG bidirectionals 12587
Part of Tfit master merge? True
Part of dREG master merge? True