DBNascent | Samples

SRZ9007619 Sample ID 710

**Data sources**
Paper identifier	Etchegaray2019histone
SRP accession	SRP194939
GEO accession	GSE130691
Samples	SRR9007619
	SRR9007620

**Technical details**
QC score	2
Replicate	3
Protocol	PRO-seq
Library prep	ligation
Spike-in	D. melanogaster
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	110 Mb
Stranded gene read counts	TXT file	925 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	882 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual
Strain	129/Sv
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	3
Raw read length	80
Read depth after trimming	61,963,592
Duplication proportion	0.5303
Proportion reads mapped	0.4809
Exon/intron ratio	6.46222
Unique read proportion	0.59941

**Bidirectionals**
Total # Tfit bidirectionals	21232
# Promoter Tfit bidirectionals	6897
# Intronic Tfit bidirectionals	7246
# Intergenic Tfit bidirectionals	4478
Total # dREG bidirectionals	20397
# Promoter dREG bidirectionals	6535
# Intronic dREG bidirectionals	6418
# Intergenic dREG bidirectionals	4840
Part of Tfit master merge?	True
Part of dREG master merge?	True