DBNascent | Samples

SRZ9007622 Sample ID 711

**Data sources**
Paper identifier	Etchegaray2019histone
SRP accession	SRP194939
GEO accession	GSE130691
Samples	SRR9007622
	SRR9007623

**Technical details**
QC score	1
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	D. melanogaster
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	295 Mb
Stranded gene read counts	TXT file	934 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual
Strain	129/Sv
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	glucose-free media	-2 day	0 day	2 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	80
Read depth after trimming	115,154,799
Duplication proportion	0.41464
Proportion reads mapped	0.6265
Exon/intron ratio	3.8891
Unique read proportion	0.76245

**Bidirectionals**
Total # Tfit bidirectionals	37486
# Promoter Tfit bidirectionals	9315
# Intronic Tfit bidirectionals	12373
# Intergenic Tfit bidirectionals	13034
Total # dREG bidirectionals	38571
# Promoter dREG bidirectionals	6371
# Intronic dREG bidirectionals	14805
# Intergenic dREG bidirectionals	13901
Part of Tfit master merge?	True
Part of dREG master merge?	True