Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRZ9007625 Sample ID 712
| Paper identifier | Etchegaray2019histone |
| SRP accession | SRP194939 |
| GEO accession | GSE130691 |
| Samples | SRR9007625 |
| SRR9007626 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | D. melanogaster |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 310 Mb |
| Stranded gene read counts | TXT file | 935 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | |
| Strain | 129/Sv |
| Genotype | Sirt6 -/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 80 |
| Read depth after trimming | 108,096,843 |
| Duplication proportion | 0.37147 |
| Proportion reads mapped | 0.677 |
| Exon/intron ratio | 4.07979 |
| Unique read proportion | 0.7486 |
| Total # Tfit bidirectionals | 38886 |
| # Promoter Tfit bidirectionals | 9741 |
| # Intronic Tfit bidirectionals | 12263 |
| # Intergenic Tfit bidirectionals | 13982 |
| Total # dREG bidirectionals | 45038 |
| # Promoter dREG bidirectionals | 7667 |
| # Intronic dREG bidirectionals | 16434 |
| # Intergenic dREG bidirectionals | 16995 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |