DBNascent | Samples

SRZ9007627 Sample ID 713

**Data sources**
Paper identifier	Etchegaray2019histone
SRP accession	SRP194939
GEO accession	GSE130691
Samples	SRR9007627
	SRR9007628

**Technical details**
QC score	1
Replicate	3
Protocol	PRO-seq
Library prep	ligation
Spike-in	D. melanogaster
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	107 Mb
Stranded gene read counts	TXT file	922 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	813 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual
Strain	129/Sv
Genotype	Sirt6 -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	3
Raw read length	80
Read depth after trimming	52,626,293
Duplication proportion	0.36767
Proportion reads mapped	0.4056
Exon/intron ratio	5.52305
Unique read proportion	0.65269

**Bidirectionals**
Total # Tfit bidirectionals	21729
# Promoter Tfit bidirectionals	6430
# Intronic Tfit bidirectionals	7012
# Intergenic Tfit bidirectionals	5562
Total # dREG bidirectionals	18862
# Promoter dREG bidirectionals	6130
# Intronic dREG bidirectionals	5601
# Intergenic dREG bidirectionals	4985
Part of Tfit master merge?	True
Part of dREG master merge?	True