DBNascent | Samples

SRZ929970 Sample ID 2526

**Data sources**
Paper identifier	Veloso2013genome-wide
SRP accession	SRP026690
GEO accession	GSE48678
Samples	SRR929970
	SRR929971
	SRR929972
	SRR929973

**Technical details**
QC score	1
Replicate	1
Protocol	Bru-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	205 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	972 Kb
dREG bidirectional regions	BED file	555 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HF1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	bromouridine (2 mM)	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes	BrU-seq
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	52
Read depth after trimming	59,405,504
Duplication proportion	0.39765
Proportion reads mapped	0.9554
Exon/intron ratio	2.75161
Unique read proportion	0.75398

**Bidirectionals**
Total # Tfit bidirectionals	11133
# Promoter Tfit bidirectionals	3464
# Intronic Tfit bidirectionals	5580
# Intergenic Tfit bidirectionals	694
Total # dREG bidirectionals	12844
# Promoter dREG bidirectionals	3111
# Intronic dREG bidirectionals	6100
# Intergenic dREG bidirectionals	2345
Part of Tfit master merge?	True
Part of dREG master merge?	True