SRZ929974 Sample ID 2527

Data sources
Paper identifier Veloso2013genome-wide
SRP accession SRP026690
GEO accession GSE48678
Samples SRR929974
SRR929975
SRR929976
SRR929977
Technical details
QC score 1
Replicate 2
Protocol Bru-seq
Library prep ligation
Spike-in None
Single/Paired end single
Raw strandedness reverse
Reverse complemented? True
Mapped strandedness forward
Timecourse False
Control/Experimental control
Wildtype & Untreated? True
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 163 Mb
Stranded gene read counts TXT file 1 Mb
Unstranded bidirectional read counts TXT file 21 Mb
Tfit bidirectional regions BED file 999 Kb
dREG bidirectional regions BED file 473 Kb
All data files ZIP archive
Cellular details
Organism H. sapiens
Sample type cell line
Cell type HF1
Clone/Individual
Strain
Genotype
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
treatment bromouridine (2 mM) -30 min 0 min 30 min
Extended notes
Pipeline info and software versions
Sample notes BrU-seq
Analysis notes
Sample metrics
Sample QC score 1
Sample NRO score 2
Raw read length 52
Read depth after trimming 49,626,227
Duplication proportion 0.42346
Proportion reads mapped 0.9578
Exon/intron ratio 3.17575
Unique read proportion 0.69053
Bidirectionals
Total # Tfit bidirectionals 11452
# Promoter Tfit bidirectionals 3411
# Intronic Tfit bidirectionals 6026
# Intergenic Tfit bidirectionals 642
Total # dREG bidirectionals 10947
# Promoter dREG bidirectionals 2880
# Intronic dREG bidirectionals 5133
# Intergenic dREG bidirectionals 1712
Part of Tfit master merge? True
Part of dREG master merge? True