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SRZ929981 Sample ID 2528
| Paper identifier | Veloso2013genome-wide |
| SRP accession | SRP026690 |
| GEO accession | GSE48678 |
| Samples | SRR929981 |
| SRR929982 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | Bru-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 180 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 303 Kb |
| dREG bidirectional regions | BED file | 343 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | primary cell |
| Cell type | skin fibroblast |
| Clone/Individual | GM00739 |
| Strain | |
| Genotype | Csb CS1AN mut |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | bromouridine (2 mM) | -30 min | 0 min | 30 min |
| Pipeline info and software versions | |
| Sample notes | BrU-seq; Cockayne syndrome fibroblasts (GM00739) |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 52 |
| Read depth after trimming | 67,584,383 |
| Duplication proportion | 0.57286 |
| Proportion reads mapped | 0.9641 |
| Exon/intron ratio | 1.59829 |
| Unique read proportion | 0.6771 |
| Total # Tfit bidirectionals | 3465 |
| # Promoter Tfit bidirectionals | 752 |
| # Intronic Tfit bidirectionals | 1840 |
| # Intergenic Tfit bidirectionals | 399 |
| Total # dREG bidirectionals | 7955 |
| # Promoter dREG bidirectionals | 1214 |
| # Intronic dREG bidirectionals | 4633 |
| # Intergenic dREG bidirectionals | 1806 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |