DBNascent | Samples

SRZ930649 Sample ID 1159

**Data sources**
Paper identifier	Kaikkonen2013remodeling
SRP accession	SRP026695
GEO accession	GSE48759
Samples	SRR930649
	SRR930650
	SRR930651
	SRR930652

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	87 Mb
Stranded gene read counts	TXT file	917 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	798 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	serum starvation (0.5% FBS)	-14 hr	0 hr	14 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	34
Read depth after trimming	34,639,029
Duplication proportion	0.47222
Proportion reads mapped	0.735
Exon/intron ratio	2.41795
Unique read proportion	0.60527

**Bidirectionals**
Total # Tfit bidirectionals	22177
# Promoter Tfit bidirectionals	9222
# Intronic Tfit bidirectionals	6942
# Intergenic Tfit bidirectionals	4048
Total # dREG bidirectionals	18399
# Promoter dREG bidirectionals	6250
# Intronic dREG bidirectionals	6391
# Intergenic dREG bidirectionals	3975
Part of Tfit master merge?	True
Part of dREG master merge?	True